Jefferson Taliaferro, PhD
Assistant Professor, Biochemistry & Molecular Genetics

Publications

  • Taliaferro JM. Transcriptome-scale methods for uncovering subcellular RNA localization mechanisms. Biochemica et Biophysica Acta - Molecular Cell Research (2022) https://doi.org/10.1016/j.bbamcr.2021.119202
  • Arora A, Goering R, Velez PT, Taliaferro JM. Visualization and quantification of subcellular RNA localization using single-molecule RNA fluorescence in situ hybridization. Methods in Molecular Biology. (2022) 244: 247-266.
  • Arora A, Gutierrez RC, Eletto D, Becker R, Brown M, Moor AE, Russ HA, Taliaferro JM. High-throughput identification of RNA localization elements reveals a regulatory role for A/G rich sequences. bioRxiv. (2021) https://doi.org/10.1101/2021.10.20.465152
  • Gillen AE, Goering R, Taliaferro JM. Quantifying alternative polyadenylation in RNAseq data with LABRAT. Methods in Enzymology. (2021) 655: 245-262.
  • Engel KL, Lo HYG, Goering R, Li Y, Spitale R, Taliaferro JM. Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq. Nucleic Acids Res. (2021) https://doi.org/10.1093/nar/gkab1185
  • Arora A, Goering R, Lo HYG, Taliaferro JM. Mechanical Fractionation of cultured neuronal cells into cell body and neurite fractions. Bio-protocol. (2021) 10.21769/BioProtoc.4048
  • Lee S, Wei L, Zhang B, Goering R, Majumdar S, Wen J, Taliaferro JM, Lai EC. ELAV/Hu RNA binding proteins determine multiple programs of neural alternative splicing. PLOS Genetics. (2021) https://doi.org/10.1101/2020.09.21.305912
  • Raj N, McEachin ZT, Harousseau W, Zhou Y, Zhang F, Merritt-Garza ME, Taliaferro JM, Kalinowska M, Marro SG, Hales CM, Berry-Kravis E, Wolf-Ochoa MW, Martinez-Cerdeno V, Wernig M, Chen L, Klann E, Warren ST, Jin P, Wen Z, Bassell GJ. Cell-type-specific profiling of human cellular models of fragile X syndrome reveal Pi3K-dependent defects in translation and neurogenesis. Cell Reports. (2021) https://doi.org/10.1016/j.celrep.2021.108991
  • Goering R, Engel KL, Gillen AE, Fong N, Bentley DL, Taliaferro JM. LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival. BMC Genomics. (2021) https://doi.org/10.1186/s12864-021-07781-1
  • Goering R, Engel KL, Gillen AE, Fong N, Bentley DL, Taliaferro JM. LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival. bioRxiv. (2020) https://doi.org/10.1101/2020.10.05.326702
  • Lee S, Zhang B, Wei L, Goering R, Majumdar S, Taliaferro JM, Lai EC. Overlapping activities of ELAV/ Hu RNA binding proteins specify multiple neural alternative splicing programs. bioRxiv. (2020) https:// doi.org/10.1101/2020.09.21.305912
  • Goering R, Hudish LI, Guzman BB, Raj N, Bassell GJ, Russ HA, Dominguez D, Taliaferro JM. FMRP promotes RNA localization to neuronal projections through interactions between its RGG domain and G-quadruplex sequences. eLife. (2020) https://doi.org/10.7554/eLife.52621
  • Kawale AA, Taliaferro JM, Kang HS, Hartmuller C, Greelof A, Stehle R, Burge CB, Rio DC, Sattler M. Structural evolution of the tissue-specific U2AF2 paralog and alternative splicing factor LS2. bioRxiv. (2020) https://doi.org/10.1101/2020.08.15.252130
  • Hudish LI, Bubak A, Triolo T, Niemeyer CS, Sussel L, Nagel M, Taliaferro JM, Russ HA. Modeling hypoxia-induced neuropathies using a fast and scalable human motor neuron differentiation system. Stem Cell Rep. (2020) https://doi.org/10.1016/j.stemcr.2020.04.003
  • Engel KL, Arora A, Goering R, Lo HYG, Taliaferro JM. Mechanisms and consequences of subcellular RNA localization across diverse cell types. Traffic. (2020) doi:10.1111/tra.12730
  • Gillette CM, Hazegh KE, Nemkov T, Stefanoni D, D’Allessandro A, Taliaferro JM, Reis T. Gene-Diet Interactions: Dietary Rescue of Metabolic Defects in spen-depleted Drosophila melanogaster. Genetics. (2020) https://doi.org/10.1534/genetics.119.303015
  • Narula A, Ellis J, Taliaferro JM, Rissland OS. Coding regions affect mRNA stability in human cells. RNA. 2019 Dec;25(12):1751-1764. PubMed PMID: 31527111
  • Taliaferro JM. Classical and emerging techniques to identify and quantify localized RNAs. Wiley Interdiscip Rev RNA. 2019 Sep;10(5):e1542. PubMed PMID: 31044542
  • Rothenberg DA, Taliaferro JM, Huber SM, Begley TJ, Dedon PC, White FM. A Proteomics Approach to Profiling the Temporal Translational Response to Stress and Growth. iScience. 2018 Nov 30;9:367-381. PubMed PMID: 30466063
  • Rothenberg DA, Taliaferro JM, Huber SM, Begley TJ, Dedon PC, White FM. A Proteomics Approach to Profiling the Temporal Translational Response to Stress and Growth. iScience. 2018 Nov 30;9:367-381. PubMed PMID: 30466063
  • Vidaki M, Drees F, Saxena T, Lanslots E, Taliaferro MJ, Tatarakis A, Burge CB, Wang ET, Gertler FB. A Requirement for Mena, an Actin Regulator, in Local mRNA Translation in Developing Neurons. Neuron. 2017 Aug 2;95(3):608-622.e5. PubMed PMID: 28735747
View All (21 Total) View Less

General Information

Department: Biochemistry & Molecular Genetics
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