Srinivas Ramachandran, PhD
Assistant Professor, Biochemistry & Molecular Genetics

Publications

• Rao S, Ahmad K, Ramachandran S. Cooperative binding between distant transcription factors is a hallmark of active enhancers. Mol Cell. 2021 Apr 15;81(8):1651-1665.e4. PubMed PMID: 33705711
• Satyanarayan Rao*, Amy L. Han*, Alexis Zukowski, Etana Kopin, Carol A. Sartorius, Peter Kabos#, Srinivas Ramachandran#. Mapping Transcription Factor-Nucleosome Dynamics from Plasma cfDNA. bioRxiv 2021.04.14.439883; doi: https://doi.org/10.1101/2021.04.14.439883
• Liu H, Ramachandran S, Fong N, Phang T, Lee S, Parsa P, Liu X, Harmacek L, Danhorn T, Song T, Oh S, Zhang Q, Chen Z, Zhang Q, Tu TH, Happoldt C, O'Conner B, Janknecht R, Li CY, Marrack P, Kappler J, Leach S, Zhang G. JMJD5 couples with CDK9 to release the paused RNA polymerase II. Proc Natl Acad Sci U S A. 2020 Aug 18;117(33):19888-19895. PubMed PMID: 32747552
• Zukowski A, Rao S, Ramachandran S. Phenotypes from cell-free DNA. Open Biol. 2020 Sep;10(9):200119. PubMed PMID: 32873154
• Henikoff S, Ramachandran S. Pioneers Invade the Nucleosomal Landscape. Mol Cell. 2018 Jul 19;71(2):193-194. PubMed PMID: 30028998
• Kami Ahmad*, Steven Henikoff, Srinivas Ramachandran*. Managing the steady state chromatin landscape by nucleosome dynamics. Annual Reviews Biochemistry (in press)